Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
LAML rs62117507 chr19:53388622 T/C 4.99E-5 105 16.3 21.82 1.03 KM Plot
LAML rs62117910 chr19:16241884 T/A 8.37E-5 109 16.23 7.13 0 KM Plot
LAML rs62117911 chr19:16241886 G/A 0.000116 105 16.17 7.13 0 KM Plot
LAML rs62117912 chr19:16245384 G/A 7.61E-5 110 16.23 8.13 0 KM Plot
LAML rs62119025 chr2:3225138 T/C 6.33E-5 110 0 14.7 15.23 KM Plot
LAML rs62452027 chr7:46228437 G/A 0.000121 111 15.7 9.63 0 KM Plot
LAML rs62486981 chr7:105155538 G/A 0.000125 110 15.7 13.1 0 KM Plot
LAML rs62486982 chr7:105157628 G/T 0.000125 110 15.7 13.1 0 KM Plot
LAML rs62486983 chr7:105161146 G/T 0.000125 110 15.7 13.1 0 KM Plot
LAML rs62486984 chr7:105162249 G/A 0.000125 110 15.7 13.1 0 KM Plot
LAML rs62486989 chr7:105177823 T/G 0.000125 110 15.7 13.1 0 KM Plot
LAML rs62486990 chr7:105178005 G/A 0.000142 109 16.17 13.1 0 KM Plot
LAML rs626966 chr13:21846724 A/G 1.06E-8 109 16.2 13.1 0 KM Plot
LAML rs6437254 chr2:242225080 G/A 6.5E-5 111 1.53 16.17 16.77 KM Plot
LAML rs6437255 chr2:242229433 A/C 6.5E-5 111 1.53 16.17 16.77 KM Plot